ImmuneDB
v0.29.1

Getting Started

  • Introduction
  • Installing with Docker (recommended)
  • Installing Locally (advanced)

Running the Pipeline

  • Running the Example Pipeline
  • Running the Pipeline on Your Data

Querying an Existing Database

  • Python API
  • Directly Querying the Database

Other

  • Referencing ImmuneDB
  • Related Publications & Software
ImmuneDB
  • Docs »
  • Related Publications & Software
  • Edit on GitHub

Related Publications & SoftwareΒΆ

Clumpiness: Schwartz, G.W., Shokoufandeh, A., Ontanon, S., Hershberg, U. (2016) Using a novel clumpiness measure to unite data with metadata: finding common sequence patterns in immune receptor germline V genes. Pattern Recognition Letters 74: 24-29

ConservedIdentification: Zhang, B., Meng, W., Luning Prak, E.T. and Hershberg U. (2015) Discrimination of germline V genes at different sequencing lengths and mutational burdens: A new tool for identifying and evaluating the reliability of V gene assignment. Journal of Immunological Methods 427: 105-116

Diversity: Schwartz, G.W., Hershberg, U. (2013) Conserved variation: identifying patterns of stability and variability in BCR and TCR V genes with different diversity and richness metrics. Phys Biol 10

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© Copyright 2018, Drexel University Systems Immunology Lab Revision 67e986ae.

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